This site will soon host a Silverlight application for viewing phylogenetic dependency networks of covariation and environmental associations in biosequences.

References Jonathan M. Carlson, Zabrina Brumme, Christine Rousseau, Chanson Brumme, Philippa Matthews, Carl Kadie, James Mullins, Bruce D. Walker, P. Richard Harrigan, Philip J.R. Goulder, David Heckerman. (November 2008) Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag. PLoS Computational Biology, 4(11): e1000225. Code Downloadable Windows program coming soon on Codeplex... Open source coming soon on Codeplex...