Jasmin Fisher
Journal Papers
2009
- Beyer A., Thomason P., Li X., Scott J., and Fisher J., Mechanistic Insights into Metabolic Disturbance during Type-II Diabetes and Obesity using Qualitative Networks , in Transactions on Computational Systems Biology, in press., 2009
2008
- Kam N., Kugler H., Marelly R., Appleby L., Fisher J., A. Pnueli, D. Harel, M.J. Stern, and E.J.A. Hubbard, A scenario-based approach to modeling development: A prototype model of C. elegans vulval fate specification , in Developmental Biology, Elsevier , August 2008
- Sadot A., Fisher J., Barak D., Admanit Y., Stern M.J., Hubbard E.J.A., and Harel D., Towards Verified Biological Models, in IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 5, pp. 1-12, January 2008
- Fisher J. and Henzinger T.A., Dichotomies between computational and mathematical models (Correspondence), in Nature Biotechnology , vol. 26, no. 7, pp. 737-8;738-9, 2008
2007
- Fisher J. and Henzinger T.A., Executable Cell Biology, in Nature Biotechnology, vol. 25, no. 11, pp. 1239-1249, November 2007
- Fisher J., Piterman N., Hajnal A., & Henzinger, T.A. Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development. PLoS Computational Biology. 3(5):e92, 2007.
- Schaub M.A., Henzinger, T.A., & Fisher J. Qualitative Networks: A Symbolic Approach to Analyze Biological Signaling Networks. BMC Systems Biology. 1:4, 2007.
2005
- Fisher J., Piterman N., Hubbard J., Stern M., & Harel D. Computational insights into C. elegans vulval development. PNAS 102(6):1951-1956, 2005. [Supporting Information].
See also Nature Reviews Genetics 6(4):255, 2005. [html].
2003
- Schwartz M., Shaked I., Fisher J., Mizrahi T., & Schori H. Protective autoimmunity against the enemy within: fighting glutamate toxicity. Trends in Neuroscience 26(6):297-302, 2003.
2002
- Wolf S., Fisher J., Bechman I., Steiner B., Kwidzinski E., & Nitsch R. Neuroprotection by T-cells depends on their subtype and activation state. Journal of Neuroimmunology 133:72-80, 2002.
2001
- Fisher J., Mizrahi T., Schori H., Yoles E., Levkovich-Verbin H., Haggiag S., Ravel M., & Schwartz M. Increased post-traumatic survival of neurons in IL-6 knockout mice on a background of EAE susceptibility. Journal of Neuroimmunology 119:1-9, 2001.
- Fisher J., Levkovitch-Verbin H., Schori H., Yoles E., Butovsky O., Kaye J.F., Ben-Nun A., & Schwartz M. Vaccination for neuroprotection in the mouse optic nerve: Implications for optic neuropathies. The Journal of Neuroscience 21(1):136-142, 2001.
Book Chapters
2010
- Fisher J. and Harel D., On Statecharts for Biology, in Symbolic Systems Biology: Theory and Methods, Jones and Bartlett Publishers, 2010
Refereed Conference Papers
2008
- L. Church, K. Apagyi, and J. Fisher, Languages for Biological Models: Importance, Implications and Challenges - A Work In Progress, in Proceedings of the Psychology of Programming Interest Group, January 2008
- J. Fisher, T.A. Henzinger, M. Mateescu, and N. Piterman, Bounded Asynchrony: A biologically-inspired notion of concurrency, in Proceedings of FMSB ’08 Cambridge, UK, Springer, January 2008
2007
- Marc Schaub, April Bezdek, Thomas Henzinger, Freddy Radtke, and Jasmin Fisher, Qualitative Crosstalk Analysis of Wnt and Notch Signaling in Mammalian Skin, in RECOMB Systems Biology, ’07 San Diego, CA, Springer, January 2007
2006
- Fisher J. & Henzinger T. A. Executable Biology. Proc. of the Winter Simulation Conference - Track on Modeling and Simulation in Computational Biology. pp. 1675-1682, 2006.
2004
- Fisher J., Harel D., Hubbard J., Piterman N., Stern M., & Swerdlin N. Combining state-based and scenario-based approaches in modeling biological systems. Proc. of Computational Methods in Systems Biology (CMSB '04), Lecture Notes in Bioinformatics, Vol. 3082, pp. 236-241, Springer-Verlag, 2004.
