KEYNOTE SPEECH
"The Fourth Paradigm: Realizing Jim Gray’s Vision for Data-Intensive Scientific Discovery"
Tony Hey, Jeff Dozier, Ben Shneiderman, Timo Hannay, Christopher Southan  

Chair: Daron Green

FM1 

FM2 

FM3 

FM4 

Genomics
Chair: Iain Buchan 

eResearch Services & Applications
Chair: Lee Dirks 

eScience Topics
Chair: Yan Xu 

Advances in Software Support
Chair: Judith Bishop  

"Computational Methods for Large-Scale DNA Data Analysis"

Xiaohong Qiu, Jaliya Ekanayake, Geoffrey C. Fox, Thilina Gunarathne, Scott Beason - Indiana University

"Generating Intelligent Multimedia Presentations from Semantic Mashups Using OAI-ORE and SMIL"

Jane Hunter, Anna Gerber - The University of Queensland

"Observing Round-the-Clock Expulsion of Matter from a Black Hole : Global Jet Watch"

Katherine Blundell - Oxford University

"Software Support for Hybrid Computing"

Shujia Zhou - University of Maryland, Baltimore County

"Tools for Scalable Genome Haplotying in the Windows Azure Cloud"

Girish Subramanian - Indiana University

Yogesh Simmhan - Microsoft Research

"Comment by Sketch: A Picture Says a Million Words"
Stephen Wilson, Jeremy Frey - University of Southampton

"Towards Complete Functional and Structural Imaging of Cortical Circuits"

R. Clay Reid, Davi Bock, Wei-Chung Reid - Harvard Medical School

"Scaling Simulations Through Declarative Processing"
Alan Demers, Oliver Gao, Johannes Gehrke, Christoph Koch, Marcos Vaz Salles, Walker White -
Cornell University

FA2 

FA3 

FA4 

Tools for Biology
Chair: Simon Mercer 

Systems for Author & Document Analysis
Chair: Lee Dirks 

Earth & Environment
Chair: Stewart Tansley  

Provenance Management for Scientific Data
Chair: Dean Guo     

"Enhancing BLAST Comprehension with SilverMap"
Peter Ansell, Lawrence Buckingham, Xin-yi Chua, James Hogan, Scott Mann, Paul Roe - Queensland University of Technology

"Scalable Solution for a Comprehensive Appraisal of Contemporary Documents"
Rob Kooper, Peter Bajcsy, Kenton McHenry - National Center for Supercomputing Applications at the University of Illinois at Urbana-Champaign

"Simple Provenance in Scientific Databases"
Nolan Li, Alexander Szalay - Johns Hopkins University

"Web Service Extension of Computational Biology Application Suite"
Robert Bukowksi, Jaroslaw Pillardy - Computational Biology Service Unit, Cornell University 

"Author Identity and Social Networking at arXiv"
Simeon Warner, Nathan Woody, Paul Ginsparg - Cornell University

Thorsten Schwander - Los Alamos National Laboratory 

"3D Geographical Environments and Geospatial Data Exploration using Flight Simulators and Geodatabases"
Alexandra Diehl, Horacio Abbate, Marta Mejail, Mercedes Sanchez - Universidad de Buenos Aires

Claudio Delrieux - Universidada Nacional del Sur, Argentina  

Provenir Ontology: Towards a Framework for eScience Provenance Management
Satya Sahoo, Amit Sheth - Wright State University

FA5 

FA6 

FA7 

FA8 

eScience Research at Microsoft
Chair: David Heckerman 

Collaboration
Chair: Michael Zyskowski 

Semantic Repositories and Modeling
Chair: Evelyne Viegas 

Data Intensive Computing
Chair: Peter Lee

"Generalized eScience Collaboration Through Sharepoint"
Marty Humphrey - University of Virginia

Catharine Van Ingen - Microsoft Research

Deb Agarwal - Lawrence Berkeley National Laboratory 

"Facilitating Next Generation Data Intensive Science Using Semantic Technologies"

Deborah McGuinness, Peter Fox - Rensselaer Polytechnic Institute 

"Data Intensive Scalable Computing: Applying
Google-Style Computing to eScience"

Randal E. Bryant -  
Carnegie Mellon University 

"Integrating Streaming Data and Semantic Repositories"

Alejandro Rodriguez, Yong Liu, James Myers - University of Illinois, Urbana Champaign

"Understanding and Maturing the Data-Intensive Scalable Computing Storage Substrate"

Garth A. Gibson - Carnegie Mellon University

"Lessons from myExperiment: Research Objects for Data Intensive Research"
David De Roure - University of Southampton

Carole Goble - University of Manchester 

"Using Multipartite Graphs for Recommendation and Discovery"

Michael Kurtz, Edwin Henneken, Alberto Accomazzi - Harvard-Smithsonian Center for Astrophysics 

"Low Power Amdahl Blades for Data Intensive Computing"

Alexander Szalay, Andreas Terzis, Alainna White, Jan Vandenberg - Johns Hopkins University

Gordon Bell, Jose Blakeley - Microsoft

Howie Huang - George Washington University

"eOcean: The Challenges Ahead and Below the Waves"

Ellen Prager, President, Earth2Ocean, Inc
Chair: Harold Javid

Workshop dinner at Carnegie Museum
 

Saturday, October 17, 2009

"Some Challenges in Natural Science"

Stephen Emmott

Chair: Tony Hey

 SM1

SM2

SM3

SM4

Bioinformatics
Chair: Yogesh Simmhan

Development in Search & Semantics for Chemistry
Chair: Daron Green

Democratizing Semantics for the Scientist
Chair: Evelyne Viegas

Cloud Computing
Chair: Dean Guo

10:15-10:45

"Bayesian Network Modelling of the Factors Influencing the Development of Obesity"
David Hoyle, Nicholas Harding, Iain Buchan - University of Manchester

"Navigating the Complex Web of Chemistry Using ChemSpider"
Antony Williams, Valery Tkachenko - Royal Society of Chemistry

"Social and Semantic Computing to Support Citizen Science"

Joel Sachs, Tejas Lagvankar, Tim Finnin - University of Maryland-Baltimore County

"Construction of a MODIS Scientific Data Reprojection and Reduction Pipeline in Windows Azure Platform"

Jie Li - University of Virginia

Youngryel Ryu - University of California, Berkeley

Keith Jackson, Deb Agarwal - Lawrence Berkeley National Laboratory

Catharine Van Ingen - Microsoft Research

"Navigating Across Multi-Scale Biological Systems Using Cognitive Modeling and Systems Approaches Conceptualized in Product Engineering"
Nagasuma Chandra - Indian Institute of Science

Satish Chandra - National Aerospace Laboratories

"The oreChem Project: Integrating Chemistry Scholarship with the Semantic Web and Web 2.0"
Carl Lagoze - Cornell University

Prasenjit Mitra, William Brouwer - Penn State University

Mark Borkum - University of Southampton

"Tupelo: a Framework for E-Science Knowledge Spaces"

Joe Futrelle, Jeff Gaynor, Joel Plutchak, James Myers, Robert McGrath -
National Center for Supercomputing Applications

"Cloud Workflow Service: Automatically Scaling Scientific Workflows on Demand"
Cui Lin - Wayne State University

Roger Barga, Dean Guo, Jared Jackson - Microsoft External Research

"Improvements in the Determination of Fundamental Principles of RNA Structure and the Prediction of RNA Secondary and Tertiary Structure"
Robin Gutell, David Gardner - University of Texas, Austin

Stuart Ozer - Microsoft

"Integrative Data Mining For Drug Discovery Using the Semantic Web"
Qian Zhu, Marlon Pierce, Geoffrey C. Fox, David J. Wild - Indiana University

Michael S. Lajiness - Eli Lilly and Company

"Extraction of NMR Spectra and Structural Data from Documents for Semantic Representation and Reuse"

Mark Borkum - University of Southampton

William Brouwer - Penn State University

"Data Integration for E-Science Using Correlated Concepts"

Lushan Han, Tim Finin, Anupam Joshi, Yelena Yesha - University of Maryland, Baltimore County

SA1

SA2

SA3

Medical Imaging
Chair: Stewart Tansley

Global Public Health
Chair: Kristin Tolle

"Segmentation of Confocal Stacks and Synaptic Regions for the Connectome Project"
Amelio Vazquez-Reina, Won-Ki Jeong, Roanna Ruiz, Bo Wang, Hanspeter Pfister - Harvard University 

Eric Miller - Tufts University

"Current Status of e-Health in Peru"

Lady Murrugarra - Universidad Peruana Cayetano Heredia

"A New Partnership for Cross-Scale, Cross-Domain eScience"

Bill Howe - University of Washington 

"A Web-Based System for Biomedical Image Storage, Annotation, Content-Based Retrieval and Exploration"

Jorge Camargo, Juan Caicedo, Angel Cruz Roa, Eduardo Romero, Clara Spinel, Fabio Gonzalez - Universidad Nacional de Colombia

David Seligmann, Jessica Forero - Politecnico Grancolombiano

"Model-Driven Support for a Vaccine Study in Kathmandu"

Jeremy Gibbons, Jim Davies, Steve Harris, Jane Metz, Matthew Snape, Andrew Pollard - University of Oxford

"Incorporating Problem-Based Learning in Medical Image Processing: A Case Study on Computing-Centric Engineering Education"
Chang Quo, May Wang - Georgia Institute of Technology 

SA4 

SA5 

SA6 

Biomedical Modeling
Chair: Kristin Tolle 

Computational Thinking Research
Chair: Tom McMail 

Data Driven Environmental Science
Chair: Christophe Poulain 

"SysMO-DB: Just Enough Exchange for Systems Biology Data and Models"
Carole Goble, Katy Wolstencroft, Stuart Owen, Sergejs Aleksejevs - University of Manchester

Wolfgang Müller, O. Krebs, Isable Rojas - EML

Jacky Snoep - University of Stellenbosch 

"Healthcare e-Labs: Opening and Integrating Models of Health"
Iain Buchan, Carole Goble, David Hoyle, John Ainsworth, Mark Delderfield, Gareth Smith, Lee Kitching - University of Manchester

John Winn, Christopher Bishop - Microsoft Research

"Modelling Data-Driven CO2 Sequestration Using Distributed HPC CyberInfrastructure"
Yaakoub El Khamra - University of Texas at Austin 

Shantenu Jha - Louisiana State University 

"Beyond Sensors: Curating Ancillary Data for Carbon-Climate Science"

Catharine Van Ingen - Microsoft Research

Marty Humphrey - University of Virginia

Deb Agarwal - Lawrence Berkeley National Laboratory 

"From Flops to Petabytes: the Expanding Role of Data in NSF Cyberinfrastructure"

Ralph Roskies and Michael Levine

Chair: Peter Lee