PhD Scholars' Journal Publications
2010
- Michael Pedersen and Gordon Plotkin, A language for biochemical systems: design and formal specification, 2010
2009
- M. Ballarino, F. Pagano, E. Girardi, M. Morlando, D. Cacchiarelli, M. Marchioni, N. J. Proudfoot, and I. Bozzoni, Coupled RNA processing and transcription of intergenic primary microRNAs, in Mol. Cell. Biol., vol. 29, pp. 5632–5638, October 2009
- Philipp Hennig, Expectation Propagation on the Maximum of Correlated Normal Variables, in arXiv:0910.0115v1 [stat:ML], October 2009
- Orsolya Kapuy, Enuo He, Sandra López-Avilés, Frank Uhlmann, John J Tyson, and Béla Novák, System-level feedbacks control cell cycle progression., in FEBS Lett, August 2009
- G. M. Fiedler, A. Leichtle, J. Kase, S. Baumann, U. Ceglarek, K. Felix, T. O. F. Conrad, H. Witzigmann, A. Weimann, Ch. Schütte, J. Hauss, M. Büchler, and J. Thiery, Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated With Pancreatic Cancer, in Clinical Cancer Research, American Association for Cancer Research,, May 2009
- Stewart Hickey, Colin Fitzpatrick, Maurice O’Connell, and Michael Johnson, Use Phase Signals to Promote Lifetime Extension for Windows PCs, in Environ. Sci. Technol., 19 February 2009
- Philippe-Alexandre Pouille, Padra Ahmadi, Anne-Christine Brunet, and Emmanuel Farge, Mechanical signals trigger Myosin II redistribution and mesoderm invagination in Drosophila embryos., in Science signaling, vol. 2, no. 66, pp. ra16, 2009
- Gernot Plank, Rebecca A.B. Burton, Patrick Hales, Martin Bishop, Tahir Mansoori, Miguel O. Bernabeu, Alan Garny, Anton J. Prassl, Christian Bollensdorff, Fleur Mason, Fahd Mahmood, Blanca Rodriguez, Vicente Grau, Jürgen E. Schneider, David Gavaghan, and Peter Kohl, Generation of histo-anatomically representative models of the individual heart: tools and application, in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 367, no. 1896, pp. 2257-2292, 2009
- Alex Spengler and Patrick Gallinari, Learning to Extract Content from News Webpages, in Advanced Information Networking and Applications Workshops, International Conference on, pp. 709-714, IEEE Computer Society, Los Alamitos, CA, USA, 2009
- Orsolya Kapuy, Enuo He, Frank Uhlmann, and Béla Novák, Mitotic exit in mammalian cells., in Mol Syst Biol, vol. 5, pp. 324, 2009
- N. Taylor and K. Cheverst, Social interaction around a rural community photo display, in International Journal of Human-Computer Studies, vol. 67, no. 12, pp. 1037 - 1047, 2009
- David Stynes and Kenneth N. Brown, Value Ordering for Quantified CSPs, in Constraints, vol. 14, no. 1, pp. 16–37, Kluwer Academic Publishers, Hingham, MA, USA, 2009
- M. Raicevic, T. Theuns, C. G. Lacey, J. C. Helly, and J.-P. Paardekooper, Simulating the effects of reionization of galaxy formation and evolution I: Method outline, in MNRAS, 2009
- M. Raicevic, T. Theuns, and R. G. Bower, Photon conservation in ray-tracing radiative transfer methods, in MNRAS, 2009
- Y. Y. Li and B. Adeva et. al. (The LHCb collaboration), Roadmap for selected key measurements of LHCb, in LHCb Public Note, vol. LHCb-PUB-2009-029, 2009
- I. T. Iliev, K. Ahn, S. Baek, N. Y. Gnedin, A. V. Kravtsov, G. Mellema, M. Norman, M. Raicevic, D. Sato, P. R. Shapiro, B. Semelin, J. Smidt, H. Susa, T. Theuns, M. Umemura, and D. Whalen, Cosmological Radiative Transfer Code Comparison Project II: The Radiative-Hydrodynamic Tests, in MNRAS, 2009
- Jan Sacha, Bartosz Biskupski, Dominik Dahlem, Raymond Cunningham, René Meier, Jim Dowling, and Mads Haahr, Decentralising a service-oriented architecture, in Peer-to-Peer Networking and Applications, Springer, 2009
- A. Morgado and J. Marques-Silva, Combinatorial Optimization Solutions for the Maximum Quartet Consistency Problem, in (submitted for publication), January 2009
- Maurice Fallon and Simon Godsill, Acoustic Source Localisation and Tracking using Track Before Detect, in IEEE Transactions on Speech and Audio Processing, 2009
- J. Müller, K. Cheverst, D. Fitton, N. Taylor, O. Paczkowski, and A. Krüger, Experiences of Supporting Local and Remote Mobile Phone Interaction in Situated Public Display Deployments, in International Journal of Mobile Human Computer Interaction, vol. 1, no. 2, pp. 1 - 21, 2009
- Fabien Corblin, Sébastien Tripodi, Eric Fanchon, Delphine Ropers, and Laurent Trilling, A declarative constraint-based method for analyzing discrete genetic regulatory networks, in Biosystems, vol. 98, no. 2, pp. 91–104, 2009
2008
- R. Strenziok, S. Hinz, C. Wolf, T. O. F. Conrad, H. Krause, A. Lingnau, M. Lein, M. Schostak, K. Miller, and M. Schrader, Serum proteomic profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry in testicular germ cell cancer patients, in World J of Urology, October 2008
- N. Desprat, W. Supatto, P. Pouille, E. Beaurepaire, and E. Farge, Tissue Deformation Modulates Twist Expression to Determine Anterior Midgut Differentiation in Drosophila Embryos, in Developmental Cell, vol. 15, no. 3, pp. 470–477, September 2008
- M. Morlando, M. Ballarino, N. Gromak, F. Pagano, I. Bozzoni, and N. J. Proudfoot, Primary microRNA transcripts are processed co-transcriptionally, in Nat. Struct. Mol. Biol., vol. 15, pp. 902–909, September 2008
- P.A Pouille and E. Farge, Hydrodynamic simulation of multi-cellular embryo lnvagination, in Physical Biology, May 2008
- Y. Y. Li and A. Augusto Alves Jr et. al. (The LHCb collaboration), The LHCb detector at the LHC, in JINST, vol. 3, no. S08005, 2008
- Guillem Rull, Carles Farré, Ernest Teniente, and Toni Urpí, Validation of mappings between schemas, in Data Knowl. Eng., vol. 66, no. 3, pp. 414-437, 2008
- Y. Y. Li, V. Gibson, and C. Lazzeroni, B^{\pm} \rightarrow D^{0} / \overline{D}^{0}(K_{\s}^{0}\pi^{+}\pi^{-})K^{\pm} selection studies at LHCb, in LHCb Public Note, vol. CERN-LHCb-2008-028, 2008
- Stewart W. Hickey and Colin Fitzpatrick, Combating Adverse Selection in Secondary PC Markets, in Environ. Sci. Technol., vol. 42, no. 8, pp. 3047-3052, 2008
- Y. Y. Li, K. Harrison, M. A. Parker, V. Lyutsarev, and A. Tsaregorodtsev, Extension of the DIRAC workload management system to allow use of distributed Windows resources, in J. Phys.: Conf. Ser., vol. 119, no. 062035, 2008
- D. Cacchiarelli, D. Santoni, and I. Bozzoni, MicroRNAs as prime players in a combinatorial view of evolution, in RNA Biol, vol. 5, pp. 120–122, 2008
- C. Yin, M Kiskowski, P.A. Pouille, E Farge, and L. Solnica-Krezel, Cooperation of polarized cell intercalations drives convergence and extension of presomitic mesoderm during zebrafish gastrulation, in Journal of Cellular Biology, pp. 180(1):221-32, 2008
- Roland Meyer, Johannes Faber, Jochen Hoenicke, and Andrey Rybalchenko, Model checking Duration Calculus: a practical approach, in FACS: Formal Aspects of Computing, 2008
- Paolo Atzeni, Paolo Cappellari, Riccardo Torlone, Philip A. Bernstein, and Giorgio Gianforme, Model-independent schema translation, in VLDB J., vol. 17, no. 6, pp. 1347-1370, 2008
2007
- Konrad Kieling, David Gross, and Jens Eisert, Minimal resources for linear optical one-way computing, in J. Opt. Soc. Am. B, vol. 24, no. 2, pp. 184, 2007
- Hans Hüttel and Michael D. Pedersen, A Logical Characterisation of Static Equivalence, in Electron. Notes Theor. Comput. Sci., vol. 173, pp. 139–157, Elsevier Science Publishers B. V., Amsterdam, The Netherlands, The Netherlands, 2007
- N. M. VanMeter, P. Lougovski, D. B. Uskov, K. Kieling, J. Eisert, and Jonathan P. Dowling, General linear-optical quantum state generation scheme: Applications to maximally path-entangled states, in Phys. Rev. A, vol. 76, pp. 063808, 2007
- Konrad Kieling, Terry Rudolph, and Jens Eisert, Percolation, renormalization, and quantum computing with non-deterministic gates, in Phys. Rev. Lett., vol. 99, pp. 130501, 2007
- Michael J. A. Smith, Stochastic Modelling of Communication Protocols from Source Code, in Electr. Notes Theor. Comput. Sci., vol. 190, no. 3, pp. 129-145, 2007
- Konrad Kieling, David Gross, and Jens Eisert, Cluster state preparation using gates operating at arbitrary success probabilities, in New J. Phys., vol. 9, pp. 200, 2007
2006
- David Gross, Konrad Kieling, and Jens Eisert, Potential and limits to cluster-state quantum computing using probabilistic gates, in Phys. Rev. A, vol. 74, pp. 042343, October 2006
- D. Quercia, M. Lad, S. Hailes, L. Capra, and S. Bhatti, Survivable wireless networking – Autonomic bandwidth sharing in mesh networks, in BT Technology Journal, vol. 24, no. 3, pp. 99–107, Kluwer Academic Publishers, Hingham, MA, USA, 2006
- T. O. F. Conrad, A. Leichtle, A. Hagehülsmann, E. Diederichs, S. Baumann, J. Thiery, and Ch. Schütte, Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level, in Lecture Notes in Computer Science, vol. 4216, pp. 119–128, Springer, 2006
- Daniele Quercia and Stephen Hailes, MATE: Mobility and Adaptation with Trust and Expected-utility, in Int. J. Internet Technology and Secured Transactions (IJITST), 2006
