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FetchClimate provides ready access to complex geographical information including, but not limited to, climatological information. FetchClimate will choose the best data set for your query, and perform all the necessary regridding in space and time. It will return a best guess, uncertainty, and provenance for your query and display the results on the map for visual exploration.
Details
Date: 22 May 2014
Version: 2.0
Size: 89.58 MB
Type: Download
ZooTracer is a desktop tool that can be used to trace animal movement in video.
Details
Date: 24 February 2014
Version: 1.0
Size: 0.37 MB
Type: Download
Download Windows Binary files Only - FaST-LMM (Factored Spectrally Transformed Linear Mixed Models) is a program for performing genome-wide association studies (GWAS) on large data sets. It runs on both Windows and Linux system, and has been tested on data sets with over 120,000 individuals.
Details
Date: 12 November 2013
Version: v2.07
Size: 3.61 MB
Type: Download
Retrieve global environmental data for any geographical region, at any grid resolution, and for any range of years, days within the year, and/or hours within the day. FetchClimate is a fast, free, intelligent environmental information retrieval service that operates over the cloud. You can access it through a simple web interface or via a few lines of code inside any .NET program.
Details
Date: 1 October 2013
Version: Beta
Type: Web application or service
This add-in for Microsoft Excel provides a simple and flexible way to work with genomic sequences, metadata, and interval data—in an Excel document. All the usual features of Excel remain available in addition to the dedicated bioinformatics features provided by the add-in. The .NET Bio Extension can also be extended by developers to use other features in the .NET Bio Framework or other custom bioinformatics capabilities.
Details
Date: 23 July 2013
Version: 1.1
Type: CodePlex project
.NET Bio is an open-source library of common bioinformatics functions, intended to simplify the creation of life science applications.
Details
Date: 23 July 2013
Version: 1.1
Type: CodePlex project
FilzbachR is an interoperability library that allows the already released Filzbach package to be accessed from the R programming environment.
Details
Date: 19 June 2013
Version: 1.0
Size: 0.07 MB
Type: Download
C# library that implements algorithms for the numerical solution of ordinary differential equations. The library incorporates .NET desktop and Silverlight builds.
Details
Date: 14 January 2013
Version: 1.1
Size: 1.48 MB
Type: Download
The .NET Bio Sequence Assembler application is intended for use by biologists and laboratory technicians who manage genomic sequencing data for alignment, assembly, and/or BLAST identification. This full-featured sample application can be extended, modified, and expanded to meet the needs of scientists, researchers, and clinicians who work with genomic data.
Details
Date: 16 April 2012
Version: 1.01
Type: CodePlex project
The Scientific Data-Set library makes it easy for .NET developers to read, write, and share scalars, vectors, matrices, and multidimensional grids common in scientific modeling. It supports CSV, NetCDF, and other file formats.
Details
Date: 28 December 2011
Version: 1.3
Size: 14.10 MB
Type: Download
Filzbach is a flexible, fast, robust, parameter-estimation engine that enables you to parameterize arbitrary, non-linear, parameter-rich models—of the kind that are necessary in biological sciences, for example--against multiple, heterogeneous data sets. Filzbach supports Bayesian parameter estimation, maximum-likelihood analysis, priors, latents, hierarchies, error propagation, and model selection. The Filzbach package can be used with Visual Studio 2010 or Visual Studio 2010 Express.
Details
Date: 13 December 2011
Version: 1.01
Size: 2.64 MB
Type: Download
This tool has been developed to assist readers of the paper “Explaining spatiotemporal dynamics in lambda-omega reaction-diffusion equations using absolute stability spectra of wavetrains”—written by Matthew J. Smith, Jens D. M. Rademacher, and Jonathan A. Sherratt and submitted to “Physica D: Nonlinear Phenomena”—in understanding the numerical dynamics illustrated and to encourage readers to experiment with changes to boundary conditions and parameter values.
Details
Date: 13 December 2011
Version: 1.1
Size: 0.93 MB
Type: Download
This biological modelling tool illustrates signaling pathways and determines cellular stabilization. It enables users to draw a biological system of interest by dragging and dropping cells, their contents, extracellular components, and relationships onto a simple canvas. Bio Model Analyzer’s analysis proves stabilization of biological systems, based upon formal methods that were developed for the specification and verification of properties in concurrent software systems.
Details
Date: 1 December 2011
Version: 1
Type: Web application or service
Dynamic Data Display adds interactive visualization of dynamic data to your Silverlight application. The download contains a set of UI controls for creating line graphs, bubble charts, heat maps, and other complex 2-D plots. The library integrates well with the Bing Maps control to show data in latitude/longitude coordinates. The controls are compatible with Expression Blend and Visual Studio Silverlight designers, or they can be operated programmatically.
Details
Date: 17 October 2011
Version: 2.0
Size: 4.82 MB
Type: Download
A parallel BLAST engine that runs on the Windows Azure cloud fabric, NCBI BLAST on Windows Azure can scale up to hundreds of compute nodes. This cloud-based implementation of the National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) searches all available sequence databases for similarities between a protein or DNA query and known sequences. BLAST on Windows Azure enables researchers to take advantage of the scalability of the Windows Azure platform to execute BLAST...
Details
Date: 25 July 2011
Version: V 1.1
Size: 62.45 MB
Type: Download
The WorldWide Telescope (WWT) Add-in for Excel enables users to visualize location-based data, with latitude/longitude or right ascension/declination, in WWT. This is achieved by sending data from Excel to WWT with the use of loosely coupled application-programming interfaces exposed by WWT. The Excel add-in enables users to leverage the power of Excel for importing external location-based data with different formats and to visualize them in WWT. Users can share WWT visualization parameters with this Excel...
Details
Date: 6 June 2011
Version: 1.0
Size: 4.50 MB
Type: Download
The Microsoft Biology Foundation (MBF) 2.0 beta is a language-neutral bioinformatics tool kit built as an extension to the Microsoft .NET Framework. It implements a range of parsers for common bioinformatics file formats; a range of algorithms for manipulating DNA, RNA, and protein sequences; and a set of connectors to biological web services such as the U.S. National Center for Biotechnology Information’s Basic Local Alignment Search Tool. MBF is available under an Open Systems Interconnection...
Details
Date: 7 April 2011
Version: Beta 1
Size: 15.77 MB
Type: Download
These two DLL files are needed to build Zentity 2.0.
Details
Date: 11 January 2011
Version: 1.0.0.0
Size: 0.05 MB
Type: Download
Our tutorial, written in Excel 2010, is designed to familiarize users with a commonly used approach in species-distribution modeling—the maximum-entropy approach. Users step through the worksheets and learn about the mathematics and assumptions used, fitting the model using the Microsoft Solver Add-in. Text in the tutorial refers to a publicly available, non-Microsoft software tool called MaxEnt, available at http://www.cs.princeton.edu/~schapire/maxent/. Users can save the data used in the Excel tutorial...
Details
Date: 17 September 2010
Version: 1
Size: 0.19 MB
Type: Download
The Microsoft Biology Foundation (MBF) is a language-neutral bioinformatics tool kit built as an extension to the Microsoft .NET Framework. It implements a range of parsers for common bioinformatics file formats; a range of algorithms for manipulating DNA, RNA, and protein sequences; and a set of connectors to biological web services such as the U.S. National Center for Biotechnology Information’s Basic Local Alignment Search Tool. MBF is available under an open-source license, and executables, source...
Details
Date: 21 June 2010
Version: 1.0
Size: 11.67 MB
Type: Download
This tool enables biologists and modelers to construct high-level theories and models of biological systems, capturing biological hypotheses, inferred mechanisms, and experimental results within the same framework. The main components of the tool are a visual editor for constructing the model and to visualize the dynamic behavior, and an execution and analysis engine that can run the models in batch mode, interactive mode, or deterministic versus nondeterministic modes. During runtime, the execution engine...
Details
Date: 17 May 2010
Version: 1.0.0.0
Size: 0.97 MB
Type: Download
This software allows biological models to be constructed as modules that can be connected to one another without altering the modules themselves. In addition, Athena houses various tools that are useful for designing synthetic networks, including tools to perform simulations, automatically derive transcription rate expressions, and view and edit synthetic DNA sequences.
Details
Date: 25 September 2009
Version: 4
Type: CodePlex project
This tool enables a user to investigate the theoretical disease model used in the paper “Host-pathogen time series data in wildlife support a transmission function between density and frequency dependence” by Matthew J. Smith, Sandra Telfer, Eva R. Kallio, Sarah Burthe, Alex R. Cook, Xavier Lambin, and Michael Begon, to be published in “Proceedings of the National Academy of Sciences of the United States of America.”
Details
Date: 12 March 2009
Version: 1.0
Size: 0.48 MB
Type: Download
3D Molecule Viewer is a stand-alone, demo version of the C-ME application that InterKnowlogy built for the Scripps Research Institute. It is a Windows Presentation Foundation application built in C#. This stand-alone, source code version of the application does not have the Microsoft SharePoint dependency and allows you to open sample 3D Protein Database Format (PDB) files directly, spin them in 3D, zoom in on them, display them from different views, and more.
Details
Date: 25 November 2008
Version: 3
Type: CodePlex project
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